debian-12-4.07_opam-2.1

2024-05-12 09:29.09: New job: test patricoferris/ocaml-variorum https://github.com/patricoferris/ocaml-variorum.git#refs/heads/main (9128770e9df08ca7a90f317acc08b9cd49da6766) (linux-x86_64:debian-12-4.07_opam-2.1)
Base: ocaml/opam@sha256:99cef6473ce753ec3ec15fdcf5a0a0fb61c4c0ce64578b12e9efbe0222b1602b
Opam project build


To reproduce locally:


git clone --recursive "https://github.com/patricoferris/ocaml-variorum.git" -b "main" && cd "ocaml-variorum" && git reset --hard 9128770e
cat > Dockerfile <<'END-OF-DOCKERFILE'
FROM ocaml/opam@sha256:99cef6473ce753ec3ec15fdcf5a0a0fb61c4c0ce64578b12e9efbe0222b1602b
# debian-12-4.07_opam-2.1
USER 1000:1000
ENV CLICOLOR_FORCE="1"
ENV OPAMCOLOR="always"
WORKDIR /src
RUN sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam
RUN opam init --reinit -ni
RUN uname -rs && opam exec -- ocaml -version && opam --version
WORKDIR /src
RUN sudo chown opam /src
RUN cd ~/opam-repository && (git cat-file -e 2275b400535e884d216047a092e70705139c9e41 || git fetch origin master) && git reset -q --hard 2275b400535e884d216047a092e70705139c9e41 && git log --no-decorate -n1 --oneline && opam update -u
COPY --chown=1000:1000 variorum.opam ./
RUN opam pin add -yn variorum.dev './'
ENV DEPS="base-bigarray.base base-threads.base base-unix.base bigarray-compat.1.1.0 conf-autoconf.0.1 conf-automake.1 conf-cmake.1 conf-libtool.1 conf-which.1 csexp.1.5.2 cstruct.6.0.1 ctypes.0.22.0 dune.3.15.2 dune-configurator.3.15.2 ezjsonm.1.2.0 hex.1.4.0 hwloc.dev integers.0.7.0 jansson.dev jsonm.1.0.2 ocaml.4.07.1 ocaml-base-compiler.4.07.1 ocaml-config.1 ocaml-secondary-compiler.4.08.1-1 ocamlbuild.0.14.3 ocamlfind.1.9.6 ocamlfind-secondary.1.9.6 sexplib0.v0.15.0 stdlib-shims.0.3.0 topkg.1.0.7 uutf.1.0.3"
ENV CI="true"
ENV OCAMLCI="true"
RUN opam update --depexts && opam install --cli=2.1 --depext-only -y variorum.dev $DEPS
RUN opam install $DEPS
COPY --chown=1000:1000 . /src
RUN opam exec -- dune build @install @check @runtest && rm -rf _build


END-OF-DOCKERFILE
docker build .
END-REPRO-BLOCK


2024-05-12 09:29.09: Using cache hint "patricoferris/ocaml-variorum-ocaml/opam@sha256:99cef6473ce753ec3ec15fdcf5a0a0fb61c4c0ce64578b12e9efbe0222b1602b-debian-12-4.07_opam-2.1-4ba725567dbcf16f831e9d0a52f971d7"
2024-05-12 09:29.09: Using OBuilder spec:
((from ocaml/opam@sha256:99cef6473ce753ec3ec15fdcf5a0a0fb61c4c0ce64578b12e9efbe0222b1602b)
 (comment debian-12-4.07_opam-2.1)
 (user (uid 1000) (gid 1000))
 (env CLICOLOR_FORCE 1)
 (env OPAMCOLOR always)
 (workdir /src)
 (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
 (run (shell "opam init --reinit -ni"))
 (run (shell "uname -rs && opam exec -- ocaml -version && opam --version"))
 (workdir /src)
 (run (shell "sudo chown opam /src"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell "cd ~/opam-repository && (git cat-file -e 2275b400535e884d216047a092e70705139c9e41 || git fetch origin master) && git reset -q --hard 2275b400535e884d216047a092e70705139c9e41 && git log --no-decorate -n1 --oneline && opam update -u"))
 (copy (src variorum.opam) (dst ./))
 (run (network host)
      (shell "opam pin add -yn variorum.dev './'"))
 (env DEPS "base-bigarray.base base-threads.base base-unix.base bigarray-compat.1.1.0 conf-autoconf.0.1 conf-automake.1 conf-cmake.1 conf-libtool.1 conf-which.1 csexp.1.5.2 cstruct.6.0.1 ctypes.0.22.0 dune.3.15.2 dune-configurator.3.15.2 ezjsonm.1.2.0 hex.1.4.0 hwloc.dev integers.0.7.0 jansson.dev jsonm.1.0.2 ocaml.4.07.1 ocaml-base-compiler.4.07.1 ocaml-config.1 ocaml-secondary-compiler.4.08.1-1 ocamlbuild.0.14.3 ocamlfind.1.9.6 ocamlfind-secondary.1.9.6 sexplib0.v0.15.0 stdlib-shims.0.3.0 topkg.1.0.7 uutf.1.0.3")
 (env CI true)
 (env OCAMLCI true)
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell "opam update --depexts && opam install --cli=2.1 --depext-only -y variorum.dev $DEPS"))
 (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
      (network host)
      (shell "opam install $DEPS"))
 (copy (src .) (dst /src))
 (run (shell "opam exec -- dune build @install @check @runtest && rm -rf _build"))
)


2024-05-12 09:29.09: Waiting for resource in pool OCluster
2024-05-12 09:29.10: Waiting for worker…
2024-05-12 09:30.04: Got resource from pool OCluster
Building on x86-bm-c14.sw.ocaml.org
All commits already cached
Submodule path 'vendor/variorum': checked out '98f7f3c81ee279c520a59f35a9ece996af7234f0'
HEAD is now at 9128770 Merge pull request #4 from patricoferris/parse-json
Synchronizing submodule url for 'vendor/variorum'
Cleared directory 'vendor/variorum'
Submodule 'vendor/variorum' (https://github.com/llnl/variorum) unregistered for path 'vendor/variorum'
Submodule 'vendor/variorum' (https://github.com/llnl/variorum) registered for path 'vendor/variorum'
Submodule path 'vendor/variorum': checked out '98f7f3c81ee279c520a59f35a9ece996af7234f0'


(from ocaml/opam@sha256:99cef6473ce753ec3ec15fdcf5a0a0fb61c4c0ce64578b12e9efbe0222b1602b)
2024-05-12 09:30.52 ---> saved as "6ad54a8a0a996de05cd03ed30cbb4884566b39028d090d19101121413431a89f"


/: (comment debian-12-4.07_opam-2.1)


/: (user (uid 1000) (gid 1000))


/: (env CLICOLOR_FORCE 1)


/: (env OPAMCOLOR always)


/: (workdir /src)


/src: (run (shell "sudo ln -f /usr/bin/opam-2.1 /usr/bin/opam"))
2024-05-12 09:30.53 ---> saved as "f0b7040ce20c0568672a3afcab01929fd18e2ee66f02faa8d94fd05399839280"


/src: (run (shell "opam init --reinit -ni"))
Configuring from /home/opam/.opamrc and then from built-in defaults.
Checking for available remotes: rsync and local, git.
  - you won't be able to use mercurial repositories unless you install the hg command on your system.
  - you won't be able to use darcs repositories unless you install the darcs command on your system.


This version of opam requires an update to the layout of /home/opam/.opam from version 2.0 to version 2.1, which can't be reverted.
You may want to back it up before going further.


Continue? [Y/n] y
Format upgrade done.


<><> Updating repositories ><><><><><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from file:///home/opam/opam-repository
2024-05-12 09:32.15 ---> saved as "1178bb4688e7e4718d4170c0ec783ce5396ae6f9cd4db4b0fb12bcb2662305da"


/src: (run (shell "uname -rs && opam exec -- ocaml -version && opam --version"))
Linux 5.15.0-101-generic
The OCaml toplevel, version 4.07.1
2.1.5
2024-05-12 09:32.15 ---> saved as "507d1b06732f1eddefe9afcbbd3414d34576360b7497df3aa76bf615c5a885e5"


/src: (workdir /src)


/src: (run (shell "sudo chown opam /src"))
2024-05-12 09:32.16 ---> saved as "b88e937d6c36e43c713a83fbd5f0a1b9c25ffbb55d9e0cc753e256236a40f949"


/src: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
           (network host)
           (shell "cd ~/opam-repository && (git cat-file -e 2275b400535e884d216047a092e70705139c9e41 || git fetch origin master) && git reset -q --hard 2275b400535e884d216047a092e70705139c9e41 && git log --no-decorate -n1 --oneline && opam update -u"))
From https://github.com/ocaml/opam-repository
 * branch                  master     -> FETCH_HEAD
   6a2ad82c27..fec8ff50cd  master     -> origin/master
2275b40053 @dra27 maintains ocaml-secondary-compiler


<><> Updating package repositories ><><><><><><><><><><><><><><><><><><><><><><>
[default] synchronised from file:///home/opam/opam-repository


Everything as up-to-date as possible (run with --verbose to show unavailable upgrades).
However, you may "opam upgrade" these packages explicitly, which will ask permission to downgrade or uninstall the conflicting packages.
Nothing to do.
# Run eval $(opam env) to update the current shell environment
2024-05-12 09:33.56 ---> saved as "721a5ea72b5c54d3305d7eda5795c2d490562520d2ba7cd42cbb98b0a56f6967"


/src: (copy (src variorum.opam) (dst ./))
2024-05-12 09:33.56 ---> saved as "8b15989fa1d95cbf6200d05ac3281a15af6e51e373db5ccef760b67d26320f3a"


/src: (run (network host)
           (shell "opam pin add -yn variorum.dev './'"))
Package variorum does not exist, create as a NEW package? [Y/n] y
[variorum.dev] synchronised (file:///src)
The following additional pinnings are required by variorum.dev:
  - hwloc.dev at git+https://github.com/patricoferris/ocaml-hwloc#3447dc5c40f0d868529aafcc84b5d2d971062b30
  - jansson.dev at git+https://github.com/patricoferris/ocaml-jansson#42cb429e722ec64807d75ae401758eb666c9d189
Pin and install them? [Y/n] y
Package hwloc does not exist, create as a NEW package? [Y/n] y
[hwloc.dev] synchronised (no changes)
hwloc is now pinned to git+https://github.com/patricoferris/ocaml-hwloc#3447dc5c40f0d868529aafcc84b5d2d971062b30 (version dev)
Package jansson does not exist, create as a NEW package? [Y/n] y
[jansson.dev] synchronised (no changes)
jansson is now pinned to git+https://github.com/patricoferris/ocaml-jansson#42cb429e722ec64807d75ae401758eb666c9d189 (version dev)
variorum is now pinned to file:///src (version dev)
2024-05-12 09:34.05 ---> saved as "4a1dc38363734edafd50ad20e912cb2355f3167f1e93ac714ea816a9d967c374"


/src: (env DEPS "base-bigarray.base base-threads.base base-unix.base bigarray-compat.1.1.0 conf-autoconf.0.1 conf-automake.1 conf-cmake.1 conf-libtool.1 conf-which.1 csexp.1.5.2 cstruct.6.0.1 ctypes.0.22.0 dune.3.15.2 dune-configurator.3.15.2 ezjsonm.1.2.0 hex.1.4.0 hwloc.dev integers.0.7.0 jansson.dev jsonm.1.0.2 ocaml.4.07.1 ocaml-base-compiler.4.07.1 ocaml-config.1 ocaml-secondary-compiler.4.08.1-1 ocamlbuild.0.14.3 ocamlfind.1.9.6 ocamlfind-secondary.1.9.6 sexplib0.v0.15.0 stdlib-shims.0.3.0 topkg.1.0.7 uutf.1.0.3")


/src: (env CI true)


/src: (env OCAMLCI true)


/src: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
           (network host)
           (shell "opam update --depexts && opam install --cli=2.1 --depext-only -y variorum.dev $DEPS"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian bookworm InRelease
- Get:2 http://deb.debian.org/debian bookworm-updates InRelease [55.4 kB]
- Get:3 http://deb.debian.org/debian-security bookworm-security InRelease [48.0 kB]
- Get:4 http://deb.debian.org/debian bookworm-updates/main amd64 Packages.diff/Index [10.6 kB]
- Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-04-23-2036.10-F-2024-04-23-2036.10.pdiff [1595 B]
- Get:5 http://deb.debian.org/debian bookworm-updates/main amd64 Packages T-2024-04-23-2036.10-F-2024-04-23-2036.10.pdiff [1595 B]
- Get:6 http://deb.debian.org/debian-security bookworm-security/main amd64 Packages [155 kB]
- Fetched 271 kB in 0s (996 kB/s)
- Reading package lists...


<><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><>
[variorum.dev] synchronised (no changes)
[jansson.dev] synchronised (no changes)
[hwloc.dev] synchronised (no changes)


[NOTE] Package ocaml-secondary-compiler is already installed (current version is 4.08.1-1).
[NOTE] Package ocaml-config is already installed (current version is 1).
[NOTE] Package ocaml-base-compiler is already installed (current version is 4.07.1).
[NOTE] Package ocaml is already installed (current version is 4.07.1).
[NOTE] Package base-unix is already installed (current version is base).
[NOTE] Package base-threads is already installed (current version is base).
[NOTE] Package base-bigarray is already installed (current version is base).


The following system packages will first need to be installed:
    autoconf automake cmake libtool


<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "autoconf" "automake" "cmake" "libtool"
- debconf: delaying package configuration, since apt-utils is not installed


2024-05-12 09:34.33 ---> saved as "68d54665abef788ed39c3cf807bb7fe8a19b86a17396a5416b1147824cf402c5"


/src: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
           (network host)
           (shell "opam install $DEPS"))


<><> Synchronising pinned packages ><><><><><><><><><><><><><><><><><><><><><><>
[jansson.dev] synchronised (no changes)
[hwloc.dev] synchronised (no changes)


[NOTE] Package ocaml-secondary-compiler is already installed (current version is 4.08.1-1).
[NOTE] Package ocaml-config is already installed (current version is 1).
[NOTE] Package ocaml-base-compiler is already installed (current version is 4.07.1).
[NOTE] Package ocaml is already installed (current version is 4.07.1).
[NOTE] Package base-unix is already installed (current version is base).
[NOTE] Package base-threads is already installed (current version is base).
[NOTE] Package base-bigarray is already installed (current version is base).
The following actions will be performed:
  - install ocamlbuild          0.14.3
  - install conf-libtool        1
  - install ocamlfind           1.9.6
  - install conf-which          1
  - install conf-cmake          1
  - install topkg               1.0.7
  - install ocamlfind-secondary 1.9.6
  - install conf-autoconf       0.1
  - install uutf                1.0.3
  - install dune                3.15.2
  - install conf-automake       1
  - install jsonm               1.0.2
  - install stdlib-shims        0.3.0
  - install sexplib0            v0.15.0
  - install csexp               1.5.2
  - install bigarray-compat     1.1.0
  - install integers            0.7.0
  - install dune-configurator   3.15.2
  - install cstruct             6.0.1
  - install ctypes              0.22.0
  - install hex                 1.4.0
  - install jansson             dev*
  - install hwloc               dev*
  - install ezjsonm             1.2.0
===== 24 to install =====


<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved bigarray-compat.1.1.0  (cached)
-> retrieved csexp.1.5.2  (cached)
-> retrieved cstruct.6.0.1  (cached)
-> installed conf-cmake.1
-> installed conf-libtool.1
-> installed conf-which.1
-> retrieved ctypes.0.22.0  (cached)
-> installed conf-autoconf.0.1
-> retrieved ezjsonm.1.2.0  (cached)
-> retrieved hex.1.4.0  (cached)
-> installed conf-automake.1
-> retrieved hwloc.dev  (no changes)
-> retrieved integers.0.7.0  (cached)
-> retrieved jansson.dev  (no changes)
-> retrieved jsonm.1.0.2  (cached)
-> retrieved ocamlbuild.0.14.3  (cached)
-> retrieved dune.3.15.2  (cached)
-> retrieved dune-configurator.3.15.2  (cached)
-> retrieved ocamlfind.1.9.6  (cached)
-> retrieved ocamlfind-secondary.1.9.6  (cached)
-> retrieved sexplib0.v0.15.0  (cached)
-> retrieved stdlib-shims.0.3.0  (cached)
-> retrieved uutf.1.0.3  (cached)
-> retrieved topkg.1.0.7  (cached)
-> installed ocamlfind.1.9.6
-> installed ocamlfind-secondary.1.9.6
-> installed ocamlbuild.0.14.3
-> installed topkg.1.0.7
-> installed uutf.1.0.3
-> installed jsonm.1.0.2
-> installed dune.3.15.2
-> installed csexp.1.5.2
-> installed bigarray-compat.1.1.0
-> installed sexplib0.v0.15.0
-> installed stdlib-shims.0.3.0
-> installed cstruct.6.0.1
-> installed integers.0.7.0
-> installed hex.1.4.0
-> installed ezjsonm.1.2.0
-> installed dune-configurator.3.15.2
-> installed ctypes.0.22.0
[ERROR] The compilation of hwloc.dev failed at "dune subst".
[ERROR] The compilation of jansson.dev failed at "dune subst".


#=== ERROR while compiling jansson.dev ========================================#
# context     2.1.5 | linux/x86_64 | ocaml-base-compiler.4.07.1 | pinned(git+https://github.com/patricoferris/ocaml-jansson#42cb429e722ec64807d75ae401758eb666c9d189#42cb429e722ec64807d75ae401758eb666c9d189)
# path        ~/.opam/4.07/.opam-switch/build/jansson.dev
# command     ~/.opam/4.07/bin/dune subst
# exit-code   1
# env-file    ~/.opam/log/jansson-1-2ff982.env
# output-file ~/.opam/log/jansson-1-2ff982.out
### output ###
# File "dune-project", line 2, characters 14-17:
# 2 | (using ctypes 0.1)
#                   ^^^
# Error: Version 0.1 of the ctypes extension has been deleted in Dune 3.11.
# Please port this project to a newer version of the extension, such as 0.3.
# Hint: You will also need to upgrade to (lang dune 3.7).


#=== ERROR while compiling hwloc.dev ==========================================#
# context     2.1.5 | linux/x86_64 | ocaml-base-compiler.4.07.1 | pinned(git+https://github.com/patricoferris/ocaml-hwloc#3447dc5c40f0d868529aafcc84b5d2d971062b30#3447dc5c40f0d868529aafcc84b5d2d971062b30)
# path        ~/.opam/4.07/.opam-switch/build/hwloc.dev
# command     ~/.opam/4.07/bin/dune subst
# exit-code   1
# env-file    ~/.opam/log/hwloc-1-22d08d.env
# output-file ~/.opam/log/hwloc-1-22d08d.out
### output ###
# File "dune-project", line 2, characters 14-17:
# 2 | (using ctypes 0.1)
#                   ^^^
# Error: Version 0.1 of the ctypes extension has been deleted in Dune 3.11.
# Please port this project to a newer version of the extension, such as 0.3.
# Hint: You will also need to upgrade to (lang dune 3.7).


<><> Error report <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
+- The following actions failed
| - build hwloc   dev
| - build jansson dev
+- 
+- The following changes have been performed
| - install bigarray-compat     1.1.0
| - install conf-autoconf       0.1
| - install conf-automake       1
| - install conf-cmake          1
| - install conf-libtool        1
| - install conf-which          1
| - install csexp               1.5.2
| - install cstruct             6.0.1
| - install ctypes              0.22.0
| - install dune                3.15.2
| - install dune-configurator   3.15.2
| - install ezjsonm             1.2.0
| - install hex                 1.4.0
| - install integers            0.7.0
| - install jsonm               1.0.2
| - install ocamlbuild          0.14.3
| - install ocamlfind           1.9.6
| - install ocamlfind-secondary 1.9.6
| - install sexplib0            v0.15.0
| - install stdlib-shims        0.3.0
| - install topkg               1.0.7
| - install uutf                1.0.3
+- 
# Run eval $(opam env) to update the current shell environment


The former state can be restored with:
    /usr/bin/opam switch import "/home/opam/.opam/4.07/.opam-switch/backup/state-20240512093433.export"
"/usr/bin/env" "bash" "-c" "opam install $DEPS" failed with exit status 31
2024-05-12 09:35.47: Job failed: Failed: Build failed